Basic Information
VIS ID
TVIS30006928
Fusion event
HIV-CDYL2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
80809462/80775565 (Hg38)
End
80809462/80775565 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA16D
Target gene
CDYL2
Nearest miRNA
hsa-mir-1225/Upstream/3906546; hsa-mir-11401/Downstream/609453;
Nearest TSS
ENST00000527434/Upstream/39205; ENST00000568445/Downstream/28698;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/234372, chr16-CpG: 180/Downstream/27862
Upstream sequence
acaattaattaattctagacattggtagaaaaaaatagcttcaaatatgtttgtaaaggatttaagaacagccattacaaaaataagaagcatatatata
Downstream sequence
actactagaacacttaaagaaaaaagaaatagcacaaataatcccaaggaaaggaaaaaaggaaagaatgatcaacagaaaatataacatatgatgtcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate