Basic Information
VIS ID
TVIS30006934
Fusion event
HIV-FBXO31 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
87401810/87368204 (Hg38)
End
87401810/87368204 (Hg38)
Orient
+
Location type
Intronic
Target gene
FBXO31
miRNAs that regulate target gene
hsa-mir-17-5p ; hsa-mir-192-5p ; hsa-mir-92b-3p ; hsa-mir-18a-3p ; hsa-mir-320a ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-3926 ; hsa-mir-3124-3p ; hsa-mir-6504-5p ; hsa-mir-3064-5p ; hsa-mir-4287 ; hsa-mir-4685-3p ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-6832-3p ; hsa-mir-6768-3p ; hsa-mir-4696 ; hsa-mir-4725-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-3065-5p ; hsa-mir-3613-3p ; hsa-mir-451b ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-3529-3p ; hsa-mir-3667-5p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p
Nearest miRNA
hsa-mir-12128/Upstream/1449788; hsa-mir-11401/Downstream/466388;
Nearest TSS
ENST00000527434/Upstream/696; ENST00000599768/Downstream/15544;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/50240, chr16-CpG: 174/Downstream/14773
Nearest cancer related gene
FBXO31(TSG, No orient, 0)
Upstream sequence
AATCAACAACTTGATAAAGCATCCACAAAAATGCTATTCAAATTCAGAAGAAAAGCAAAATGATGGCACAGTGCTAATGAATACAACAATCCTTAGTGGG
Downstream sequence
TTTTTCCTACTGTCACCAAAAGGTCACGACAAATGAACCAGAGGAGAATAAATGTCATTCTGACCCAACTGCTCCTTTAAGTAATGTTCGATATTTTCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate