Basic Information
VIS ID
TVIS30006936
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
88139637/88106031 (Hg38)
End
88139637/88106031 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-11401/Upstream/252067; hsa-mir-4722/Downstream/362887;
Nearest TSS
ENST00000527434/Upstream/5046; ENST00000563521/Downstream/71258;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/2039, chr16-CpG: 49/Downstream/14358
Nearby gene
LOC400553(No orient, 5046)
Upstream sequence
GGCCTGGCCCAGGAGGCTCCATCATGGTTGCAAGCTGCAGGCCAACTGGGTCTTGGCACGGGCCCAGTAAGCTGCTTTCAGGGAGTCTGTGAGGAGCTGC
Downstream sequence
CTCCTGGGTCAGCCACCTCTGAGTAGCAGAGGATTTAAAAACCAGACCCCATTGCCCTGCCACACCTGCAACATCTGGCCCAGCACAGTGTGTGTCCTTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate