Basic Information
VIS ID
TVIS30006938
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
88762487/88696079 (Hg38)
End
88762487/88696079 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-11401/Upstream/227048; hsa-mir-4722/Downstream/20199;
Nearest TSS
ENST00000527434/Upstream/9586; ENST00000561699/Downstream/422;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/9209, chr16-CpG: 37/Downstream/1123
Nearby gene
RNF166(No orient, 416)
Upstream sequence
TGTTGGCCTGAGGCCCTTGGACACTGGAGAACAGGACATCCCATGGCCCTGGTGGTGGCCCCTCAGAGAACTACAGGCAGTTAGTGTAACACTCAGTATG
Downstream sequence
CTCAGAAACCAATCCAGGAGGTGCTGAggtggcgcacacctgtagtcccagtgacacgggaggtcaaggcgagtggaccacttgagcccaggagatcgag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate