Basic Information
VIS ID
TVIS30006942
Fusion event
HIV-LOC101927817 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
89504982/89438574 (Hg38)
End
89504982/89438574 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC101927817
Nearest miRNA
hsa-mir-11401/Upstream/722237;
Nearest TSS
ENST00000527434/Upstream/20075; ENST00000646707/Downstream/50619;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/4756, chr16-CpG: 239/Downstream/50833
Upstream sequence
acatccagctaatttgtgtgtgtgtgtgcgtatttttagtagatacagggtttcactaggttgggccaggctggtcttgaacttatgacttcaggtgatc
Downstream sequence
cacccacctgggcctcccaaagtgctgggattacaggtatgagccaccgtgcccATCCAAGAAAATTTTCTAAAAAAAGACATACTGGGTCATGATGGAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate