VISDB Viral Integration Site DataBase

VIS ID

TVIS30006948

Fusion event

HIV-FANCA integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q24.3

Reference genome

Start

End

89829284/89762876 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-17-5p ; hsa-mir-503-5p ; hsa-mir-5089-5p ; hsa-mir-6807-5p ; hsa-mir-4731-5p ; hsa-mir-5589-5p ; hsa-mir-6786-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-1227-5p ; hsa-mir-1224-5p ; hsa-mir-7843-3p ; hsa-mir-4755-3p ; hsa-mir-4751 ; hsa-mir-5004-5p ; hsa-mir-4786-3p ; hsa-mir-544b ; hsa-mir-1224-3p ; hsa-mir-3937 ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-6895-5p ; hsa-mir-140-3p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-4664-3p ; hsa-mir-1180-3p ; hsa-mir-4497 ; hsa-mir-6799-5p ; hsa-mir-1247-3p ; hsa-mir-5587-3p ; hsa-mir-6840-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-4268 ; hsa-mir-2276-3p ; hsa-mir-1236-3p ; hsa-mir-6787-3p ; hsa-mir-877-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6504-3p ; hsa-mir-3943 ; hsa-mir-4438

Nearest miRNA

hsa-mir-11401/Upstream/1046539;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/40195, chr16-CpG: 140/Downstream/53108

Upstream sequence

cacatcaccatgaccagctaagtttttTAAAAACATTTTTAGGAggccgagcacggtggctcatgcctgtaatcccagcactttgggaggccgaggcagg

Downstream sequence

cagatcacgaggtcagcagattgagaccatcctagctaacacggtgaaaccctgtttctactaaaaatacgaaaaaAAAAAAAAAAAAGggttgggcgtg