Basic Information
VIS ID
TVIS30006953
Fusion event
HIV-ABR integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
979734/1076494 (Hg38)
End
979734/1076494 (Hg38)
Orient
-
Location type
Intronic
Target gene
ABR
miRNAs that regulate target gene
hsa-mir-877-3p ; hsa-mir-93-3p ; hsa-mir-92b-3p ; hsa-mir-18a-5p
Nearest miRNA
hsa-mir-3183/Upstream/53935; hsa-mir-10226/Downstream/637409;
Nearest TSS
ENST00000595228/Upstream/6511; ENST00000438344/Downstream/2628;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/3832, chr17-CpG: 24/Downstream/1774
Upstream sequence
TGTGGCTCAGCCCATCTTCAGGGGGAAAAAATCACACTGGAGAACCCCAGAGACCCAAAAGAAAGCACAAGCTCAGCAGACACCTGCCAGGGTGGGCTCC
Downstream sequence
GGAGTGGCGGCTCCACAGAAAGCTGACACTGCATTATCGGCTCCCCGCAGCCCTCTCTTGGGTCCCAAGAGGAAGAGGTTTCTGACTAAGCTCAGAGGTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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