VISDB Viral Integration Site DataBase

VIS ID

TVIS30006954

Fusion event

HIV-YWHAE integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

p13.3

Reference genome

Start

End

1295839/1392545 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-877-3p ; hsa-mir-92b-3p ; hsa-mir-484 ; hsa-mir-30e-3p ; hsa-mir-320a ; hsa-mir-186-5p ; hsa-mir-149-5p ; hsa-mir-221-3p ; hsa-mir-100-5p ; hsa-mir-30a-3p ; hsa-mir-26a-5p ; hsa-let-7e-5p ; hsa-let-7b-5p ; hsa-mir-302a-5p ; hsa-mir-5002-5p ; hsa-mir-1266-3p ; hsa-mir-31-5p ; hsa-mir-6758-5p ; hsa-mir-653-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-3977 ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-4276 ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-6806-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-5192 ; hsa-mir-4445-5p ; hsa-mir-4468 ; hsa-mir-194-3p ; hsa-mir-5693 ; hsa-mir-4691-3p ; hsa-mir-548l ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-6734-5p ; hsa-mir-6825-5p ; hsa-mir-4725-3p ; hsa-mir-6780b-5p ; hsa-mir-4271 ; hsa-mir-7106-5p ; hsa-mir-765 ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-6783-5p ; hsa-mir-4433b-3p ; hsa-mir-4779 ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-4540 ; hsa-mir-3591-5p ; hsa-mir-4711-3p ; hsa-mir-550a-3p ; hsa-mir-200c-5p ; hsa-mir-6838-3p ; hsa-mir-548b-3p ; hsa-mir-3133 ; hsa-mir-142-3p ; hsa-mir-203a-5p ; hsa-mir-152-5p ; hsa-mir-597-3p ; hsa-mir-182-3p ; hsa-mir-876-3p ; hsa-mir-323a-5p ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-5190 ; hsa-mir-10b-3p ; hsa-mir-4495 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-3662 ; hsa-mir-6509-5p ; hsa-mir-2053 ; hsa-mir-4775 ; hsa-mir-5581-3p ; hsa-mir-8068 ; hsa-mir-569 ; hsa-mir-5087 ; hsa-mir-6872-3p ; hsa-mir-329-5p ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-32-3p ; hsa-mir-33a-3p ; hsa-mir-409-3p

Nearest miRNA

hsa-mir-3183/Upstream/369986; hsa-mir-10226/Downstream/321358;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/68078, chr17-CpG: 113/Downstream/6767

Upstream sequence

TTGCTGCTCTTTCCTACTCCTTAATGGATTCCATTAGACAGCTATCTAGCCAACCACCCGGAACAACACTGGTGAATCATATGCCAACCTTTGTCCCTCC

Downstream sequence

TAGAAGTTGTATGTCTATATCTggccgggtgcggtggctcacacctataatcccagcattttgggaggctgaggcaggcggactacctgaggtcaggagt