VISDB Viral Integration Site DataBase

VIS ID

TVIS30006968

Fusion event

HIV-TSR1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

p13.3

Reference genome

Start

End

2236824/2333530 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-mir-744-5p ; hsa-mir-421 ; hsa-mir-27b-3p ; hsa-mir-23b-3p ; hsa-mir-183-5p ; hsa-mir-92a-3p ; hsa-mir-16-5p ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-653-3p ; hsa-mir-4420 ; hsa-mir-1273e ; hsa-mir-4709-3p ; hsa-mir-340-5p ; hsa-mir-636 ; hsa-mir-4635 ; hsa-mir-4699-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-520f-3p ; hsa-mir-302c-3p ; hsa-mir-32-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-17-5p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-106a-5p ; hsa-mir-20b-5p ; hsa-mir-4316 ; hsa-mir-4710 ; hsa-mir-3188 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-2467-5p ; hsa-mir-3975 ; hsa-mir-3605-5p ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-6773-3p ; hsa-mir-6847-5p ; hsa-mir-1208 ; hsa-mir-6760-3p ; hsa-mir-4735-3p ; hsa-mir-18b-5p ; hsa-mir-18a-5p ; hsa-mir-3165 ; hsa-mir-6880-5p ; hsa-mir-8071 ; hsa-mir-5093 ; hsa-mir-3934-3p ; hsa-mir-203a-3p ; hsa-mir-194-3p ; hsa-mir-5693 ; hsa-mir-3668 ; hsa-mir-3150b-5p ; hsa-mir-3150a-5p ; hsa-mir-335-3p ; hsa-mir-3145-3p ; hsa-mir-1324 ; hsa-mir-361-5p ; hsa-mir-2115-3p ; hsa-mir-3171 ; hsa-mir-496 ; hsa-mir-549a ; hsa-mir-576-3p

Nearest miRNA

hsa-mir-132/Upstream/283150; hsa-mir-10226/Downstream/359331;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/29445, chr17-CpG: 178/Downstream/2806

Upstream sequence

GGGTGAGGAGAGACTTTCAACTATACCCCCACCCCACTCTATCCTATAGGGCCCTCACTTGGAACAGCTACAGAAAATCCACAATTCCAGGTCAGATGAA

Downstream sequence

TTACAGACAAGTTTACCAATACTGACCCTTTGCCTCGCTCAGCTCCTCCTCAGTGGGCCAGGTTTGCTCTCCCTCCATTGGATCTGGGATAACCTCTGCT