VISDB Viral Integration Site DataBase

VIS ID

TVIS30006978

Fusion event

HIV-UBE2G1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

p13.2

Reference genome

Start

End

4207094/4303799 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-18a-5p ; hsa-mir-1226-3p ; hsa-mir-320a ; hsa-mir-4521 ; hsa-mir-6826-5p ; hsa-mir-3158-5p ; hsa-mir-1827 ; hsa-mir-6866-5p ; hsa-mir-155-5p ; hsa-mir-2467-3p ; hsa-mir-6800-5p ; hsa-mir-539-5p ; hsa-mir-1252-5p ; hsa-mir-17-3p ; hsa-mir-1205 ; hsa-mir-1184 ; hsa-mir-3919 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4759 ; hsa-mir-5197-3p ; hsa-mir-338-5p ; hsa-mir-4517 ; hsa-mir-6507-5p ; hsa-mir-548c-3p ; hsa-mir-493-5p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-4693-3p ; hsa-mir-6770-5p ; hsa-mir-4712-3p ; hsa-mir-6891-5p ; hsa-mir-3154 ; hsa-mir-3173-3p ; hsa-mir-4428 ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-4531 ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-139-3p ; hsa-mir-4725-5p ; hsa-mir-4670-3p ; hsa-mir-345-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p

Nearest miRNA

hsa-mir-1253/Upstream/1555617; hsa-mir-10226/Downstream/665903;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/39741, chr17-CpG: 178/Downstream/61531

Upstream sequence

CACACAGGACTGGAAAATAATTTATAACTGGAATAGAATTTTGCAACTGTAAAAGAATGTAATTCAGAGTTTTGGTTAACTGATTCTTCATTTTCTATAT

Downstream sequence

CTACCCAAGGCAATACTACAAAACACATAATCTTAAGATTCTCCAGATTTTTCATATCATTGCCAGTGCTTAAAAACAAAATAAATAAATAAGACATACT