Basic Information
VIS ID
TVIS30006983
Fusion event
HIV-SLC16A13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
6941337/7038018 (Hg38)
End
6941337/7038018 (Hg38)
Orient
-
Location type
Intronic
Target gene
SLC16A13
miRNAs that regulate target gene
hsa-mir-1229-3p ; hsa-mir-6513-5p ; hsa-mir-4763-5p ; hsa-mir-5089-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-6807-5p ; hsa-mir-3147 ; hsa-mir-4425 ; hsa-mir-6872-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-4687-5p ; hsa-mir-6863 ; hsa-mir-6079 ; hsa-mir-7977 ; hsa-mir-4455 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-4493 ; hsa-mir-383-3p
Nearest miRNA
hsa-mir-1253/Upstream/19996; hsa-mir-10226/Downstream/185279;
Nearest TSS
ENST00000595228/Upstream/1921; ENST00000578269/Downstream/5588;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/1247, chr17-CpG: 164/Downstream/4052
Upstream sequence
ttccacaatcccaaaaagtgtattattacattttgcagttgagaaggttgaggctgggggtgttaagtaaaacacacaaggttacacagctatgaagtat
Downstream sequence
ccaagccaagattgtatcccaggtctgtgggactccgaagcaagtgctacattctgctgcTGGGCAATGCGGGGATTACTGTGTGCCTTGAGCTCCCTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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