Basic Information
VIS ID
TVIS30006993
Fusion event
HIV-NAA38 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
7779928/7876610 (Hg38)
End
7779928/7876610 (Hg38)
Orient
-
Location type
Intronic
Target gene
NAA38
Nearest miRNA
hsa-mir-1253/Upstream/653231; hsa-mir-10226/Downstream/211446;
Nearest TSS
ENST00000595228/Upstream/18325; ENST00000574022/Downstream/8196;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/18248, chr17-CpG: 92/Downstream/8351
Nearby gene
CHD3(No orient, 8195)
Upstream sequence
ACCTAAACTGCCCTTTTACTTCCTCTTTGCTATACAAATCTCAGTTATTTGGGAGCTAACCTCAAATGCAACTACATATGAAAGTTATTTACTTGCTTCC
Downstream sequence
CCCCTCCCAACCAAGAAAGAGCTTTCTTCTCTGAATGCTGATTTTACAGCCCATAACCATCATCACAATCATATACTGCTACTTAGGTTTTTATATCTGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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