Basic Information
VIS ID
TVIS30006996
Fusion event
HIV-LOC105371517 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
7860205/7956887 (Hg38)
End
7860205/7956887 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371517
Nearest miRNA
hsa-mir-1253/Upstream/733508; hsa-mir-10226/Downstream/131169;
Nearest TSS
ENST00000595228/Upstream/9263; ENST00000574510/Downstream/45707;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/24636, chr17-CpG: 33/Downstream/33125
Nearby gene
CNTROB(No orient, 6968)
Upstream sequence
ttcctctcttggtattcgtaagtatttagctcccacttataagtgagaatatgcggaatttggttttctgttcctgcgttagtttactgagggtaatggc
Downstream sequence
ctcccgctccatccatgttcccacagaagacatgatctcgttcttttttttgcggagtctccctctgtcgcccaggctggagtgcagtggtgtgatcacg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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