Basic Information
VIS ID
TVIS30007000
Fusion event
HIV-PIK3R5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
8837548/8934231 (Hg38)
End
8837548/8934231 (Hg38)
Orient
-
Location type
Intronic
Target gene
PIK3R5
Nearest miRNA
hsa-mir-1253/Upstream/747227; hsa-mir-10226/Downstream/3147668;
Nearest TSS
ENST00000595228/Upstream/21714; ENST00000585297/Downstream/31384;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/45544, chr17-CpG: 81/Downstream/30921
Upstream sequence
agaagtaatgctgtctttactctgagatgacatgactgtatacttagaaaatcctaaggaatctattaaaaactaccattagcgaatttatcaaggttac
Downstream sequence
agaatacaaagtcagtatttaaaagtcaattgtacttctacatattaataactaccaatttgaaagtgaagtttttagaaacaccattcataatagcatc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate