Basic Information
VIS ID
TVIS30007002
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
10103827/10200510 (Hg38)
End
10103827/10200510 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1253/Upstream/2013506; hsa-mir-10226/Downstream/1881389;
Nearest TSS
ENST00000595228/Upstream/1959; ENST00000609088/Downstream/91310;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/1387, chr17-CpG: 25/Downstream/437654
Nearby gene
GAS7(No orient, 1959)
Upstream sequence
CAAGCAGATTATTTGTAATAGTCCATCAATTGCAAAGTCTTGAACATTCGCTTGGCCGGAAATATAAAGAAACAAACTCTTGACCACAGTCACCACTAAG
Downstream sequence
AGTCCCTTAAAGCGGAGCTGCATAACTTCATATCAAAAACAGTCATTAAAAATAGCTGGCCCAATGAAGTTTTAAAAGAGATACAATTCCTTGTATCAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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