VISDB Viral Integration Site DataBase

VIS ID

TVIS30007007

Fusion event

HIV-MYOCD integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

p12

Reference genome

Start

End

12653092/12749775 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-6875-3p ; hsa-mir-629-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-642a-5p ; hsa-mir-7106-3p ; hsa-mir-4778-3p ; hsa-mir-130b-5p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-877-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-335-3p ; hsa-mir-6846-3p ; hsa-mir-6832-3p ; hsa-mir-1238-3p ; hsa-mir-3148 ; hsa-mir-3667-5p ; hsa-mir-3646 ; hsa-mir-3662 ; hsa-mir-3978 ; hsa-mir-6124 ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-4652-3p ; hsa-mir-6809-3p ; hsa-mir-4753-3p ; hsa-mir-3182 ; hsa-mir-5571-5p ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-3124-3p ; hsa-mir-2115-5p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-6798-3p ; hsa-mir-627-3p ; hsa-mir-5088-3p ; hsa-mir-7850-5p ; hsa-mir-4529-3p ; hsa-mir-4520-2-3p ; hsa-mir-4520-3p ; hsa-mir-5591-3p ; hsa-mir-3927-5p ; hsa-mir-141-5p ; hsa-mir-660-5p ; hsa-mir-6780a-3p ; hsa-mir-607 ; hsa-let-7i-3p ; hsa-mir-3613-3p ; hsa-mir-4778-5p ; hsa-mir-548as-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-145-5p ; hsa-mir-9-5p

Nearest miRNA

hsa-mir-1253/Upstream/667779; hsa-mir-10226/Downstream/167493;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/83757, chr17-CpG: 90/Downstream/39645

Upstream sequence

cacatacatatgtgtatatatgtatacatatgtgtatatatatgtgtGTGTGTATATATATATATGATTTCAGTGATCTTTGTGCCTACATTTATTAGTT

Downstream sequence

TCTCTGATTATTTCCTCAGGCTAGAATAAAATTCCTGAATTAAATATATTAATATTGTTTAAAGTTTtttgtttgtttgtttgtttgtttttgagacgga