Basic Information
VIS ID
TVIS30007012
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
15275945/15372628 (Hg38)
End
15275945/15372628 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA17A
Nearest miRNA
hsa-mir-1253/Upstream/120932; hsa-mir-10226/Downstream/909386;
Nearest TSS
ENST00000595228/Upstream/30987; ENST00000584540/Downstream/45250;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/30819, chr17-CpG: 71/Downstream/190417
Nearby gene
TEKT3(No orient, 30987)
Upstream sequence
gtgagctgagatcgcgccactgcactccagcctgggcgacaagagcgagagactccgtctcaaaaataagtaaataaataaaataataataataaattaa
Downstream sequence
ccttagcttactgttaatttttttttttactttatacgcttcactgtttttaaactttttataacaacactaaaaacacaaacacattgtacagctatat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate