Basic Information
VIS ID
TVIS30007018
Fusion event
HIV-NCOR1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
16029395/16126081 (Hg38)
End
16029395/16126081 (Hg38)
Orient
+
Location type
splicing
Target gene
NCOR1
miRNAs that regulate target gene
hsa-mir-1301-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-320a ; hsa-let-7b-5p ; hsa-mir-34a-3p
Nearest miRNA
hsa-mir-1253/Upstream/874385; hsa-mir-10226/Downstream/155933;
Nearest TSS
ENST00000595228/Upstream/3446; ENST00000463810/Downstream/68530;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/125707, chr17-CpG: 118/Downstream/88880
Upstream sequence
caatatatccatgtgacaactgtactccctatatctacaaaaataaaaataaaataaaaataaacatttaacttattatataactaattatttaaCTCAC
Downstream sequence
TTGGAGtcttctttttcatctttttcctcttcatctttcttttcttcttcttttttttctgttttttctgctttatcctcttctttttcttctacttttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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