Basic Information
VIS ID
TVIS30007032
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
26780640/28453622 (Hg38)
End
26780640/28453622 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/92888; hsa-mir-10226/Downstream/407747;
Nearest TSS
ENST00000595228/Upstream/46425; ENST00000545060/Downstream/19671;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/47244, chr17-CpG: 55/Downstream/98645
Nearby gene
SLC13A2(No orient, 20024)
Upstream sequence
ttcaattaatttgataagacagctcccacagaactcaggaaaatacttacaattacccatttatttacttatttgtttatttaagtagtcatcatcattg
Downstream sequence
gatacccatttattctaaagaatatcacggccaggtgcagtggctcatgcctggaatctcagaactttgggaggccaaggcaggaggatcagaccagtct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate