VISDB Viral Integration Site DataBase

VIS ID

TVIS30007046

Fusion event

HIV-CRLF3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

29127335/30800317 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-671-5p ; hsa-mir-548c-3p ; hsa-mir-708-3p ; hsa-mir-6516-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-455-3p ; hsa-mir-203b-3p ; hsa-mir-887-3p ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-7106-5p ; hsa-mir-149-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-4257 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-555 ; hsa-mir-661 ; hsa-mir-5186 ; hsa-mir-6861-5p ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-6742-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-508-5p ; hsa-mir-7-2-3p ; hsa-mir-5688 ; hsa-mir-7-1-3p ; hsa-mir-495-3p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-6888-3p ; hsa-mir-4743-3p ; hsa-mir-4778-5p ; hsa-mir-7848-3p ; hsa-mir-3607-3p ; hsa-mir-1183 ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-504-5p ; hsa-mir-10a-5p ; hsa-mir-10b-5p

Nearest miRNA

hsa-mir-1180/Upstream/683145; hsa-mir-10226/Downstream/294033;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/68426, chr17-CpG: 60/Downstream/24146

Upstream sequence

gcgttctaatctctttcatctgctcttctcacattacacggtgtcccttgatgattgtacttattccaatagattcagatttgatatatatgccattaac

Downstream sequence

tgccatactgacatctcctggtatgatctctctcctaagaatcatacccgtatttccatctTAAGCACCTCAAACTCACCATGCCCAAGCCAAATGCCTA