Basic Information
VIS ID
TVIS30007061
Fusion event
HIV-LOC105371750 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q12
Reference genome
GRCh37/hg19
Start
35088339/36732031 (Hg38)
End
35088339/36732031 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105371750
Nearest miRNA
hsa-mir-1180/Upstream/4381829; hsa-mir-10226/Downstream/301714;
Nearest TSS
ENST00000595228/Upstream/9448; ENST00000619297/Downstream/204591;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/27784, chr17-CpG: 65/Downstream/76042
Nearby gene
MRM1(No orient, 122932)
Upstream sequence
TTGGCGAGGCACGCACTCACTCCTTGGGATTTACAATGGGCTGAATTCATTTGCATAACAAAATTGGCTCGGGTATCCAAGTGTTGCAGGAAGACAAGTG
Downstream sequence
TAACATTACGCAGAACAAGCAGCTGGGAGGAAGGTTACCACCAACAATGAGGGAACAAGATGCCCGCCCACCTGCTGCCTCTGCCAACCTTTCATCCACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate