VISDB Viral Integration Site DataBase

VIS ID

TVIS30007068

Fusion event

HIV-FBXO47 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q12

Reference genome

Start

End

37110276/38954023 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-642a-5p ; hsa-mir-4420 ; hsa-mir-452-3p ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-1304-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-2114-5p ; hsa-mir-4724-3p ; hsa-mir-1252-5p ; hsa-mir-654-3p ; hsa-mir-1277-5p ; hsa-mir-651-3p ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-874-3p ; hsa-mir-3157-3p ; hsa-mir-6886-3p ; hsa-mir-938 ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4661-5p ; hsa-mir-4279 ; hsa-mir-5571-5p ; hsa-mir-498 ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-6742-3p ; hsa-mir-5089-5p ; hsa-mir-6504-3p ; hsa-mir-1228-3p ; hsa-mir-1273g-3p ; hsa-mir-1285-3p ; hsa-mir-196a-3p ; hsa-mir-3187-5p ; hsa-mir-3613-3p ; hsa-mir-3672 ; hsa-mir-371a-5p ; hsa-mir-371b-5p ; hsa-mir-372-5p ; hsa-mir-373-5p ; hsa-mir-455-3p ; hsa-mir-4793-3p ; hsa-mir-4797-5p ; hsa-mir-495-5p ; hsa-mir-508-5p ; hsa-mir-5189-5p ; hsa-mir-5586-3p ; hsa-mir-612 ; hsa-mir-616-5p ; hsa-mir-6499-3p ; hsa-mir-6512-3p ; hsa-mir-6516-5p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6807-5p ; hsa-mir-6849-3p ; hsa-mir-6860 ; hsa-mir-6864-3p ; hsa-mir-759 ; hsa-mir-766-3p ; hsa-mir-7703 ; hsa-mir-873-3p ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-1180/Upstream/38981; hsa-mir-10226/Downstream/343377;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/35179, chr17-CpG: 51/Downstream/197404

Upstream sequence

GGCTGGTAGGCTGAGCACAGCAAGATTCTTACGGGTGCagtgcctgcctcacaaggttgttgtaaatttaaattagttaatacatgttgtcgggtgtggt

Downstream sequence

tgctcacgcctgtaatctcagcactttgggaggccgaggtgggtggattgcttgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccctgt