Basic Information
VIS ID
TVIS30007088
Fusion event
HIV-MSL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
38291172/40134919 (Hg38)
End
38291172/40134919 (Hg38)
Orient
-
Location type
UTR3
Target gene
MSL1
miRNAs that regulate target gene
hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-539-5p ; hsa-mir-2278 ; hsa-mir-4428 ; hsa-mir-451b ; hsa-mir-5694 ; hsa-mir-6838-5p ; hsa-mir-449b-3p ; hsa-mir-218-5p ; hsa-mir-8485 ; hsa-mir-103b
Nearest miRNA
hsa-mir-1180/Upstream/108510; hsa-mir-10226/Downstream/27014;
Nearest TSS
ENST00000595228/Upstream/2928; ENST00000583649/Downstream/5399;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/11797, chr17-CpG: 52/Downstream/5301
Upstream sequence
ACAACCTCACCATGAGCTTTAGGACCAGAAGAGGAATGACAAGTGAAGCGATGAAGCAAGCCATCTTCACAGAGTAGAAAAGACATCGGAGAGTTGGTAG
Downstream sequence
ATAACTGTCTGAAAAGATAGTTGTTCATTTGAAACTATTCTGTGATACAGTCATGTGGGAAGGGATGTTTGGCTGTGATTATTTTTTCAGTTAATGGATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate