Basic Information
VIS ID
TVIS30007099
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
39833920/41677668 (Hg38)
End
39833920/41677668 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/160451; hsa-mir-10226/Downstream/817105;
Nearest TSS
ENST00000595228/Upstream/52826; ENST00000586699/Downstream/11217;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/11485, chr17-CpG: 99/Downstream/10913
Nearby gene
EIF1(No orient, 11207)
Upstream sequence
cctgatttataaccattggccagaagcacgtgaagcgcagacttgtggctggcattgcagtgggacagtcttAaggaattggaggctgcagtgagctatg
Downstream sequence
atcacaccactgcactccagcctgggcaacagagcaagaccctgtctctaaaaGtagatagatagatagatagatagatagatagatagatagatagaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate