VISDB Viral Integration Site DataBase

VIS ID

TVIS30007110

Fusion event

HIV-GJC1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.31

Reference genome

Start

End

42888676/44811308 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-7-5p ; hsa-mir-671-3p ; hsa-mir-630 ; hsa-mir-1228-3p ; hsa-mir-1273c ; hsa-mir-1273e ; hsa-mir-1273g-3p ; hsa-mir-150-5p ; hsa-mir-1976 ; hsa-mir-23a-5p ; hsa-mir-23b-5p ; hsa-mir-25-5p ; hsa-mir-3653-5p ; hsa-mir-377-5p ; hsa-mir-4279 ; hsa-mir-4293 ; hsa-mir-4459 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4695-5p ; hsa-mir-4714-3p ; hsa-mir-4722-3p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-4793-3p ; hsa-mir-498 ; hsa-mir-508-5p ; hsa-mir-5089-5p ; hsa-mir-5571-5p ; hsa-mir-562 ; hsa-mir-5697 ; hsa-mir-5708 ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-619-5p ; hsa-mir-6499-3p ; hsa-mir-6506-5p ; hsa-mir-6512-3p ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-665 ; hsa-mir-6720-5p ; hsa-mir-6727-3p ; hsa-mir-6742-3p ; hsa-mir-6747-3p ; hsa-mir-6814-5p ; hsa-mir-6840-3p ; hsa-mir-766-3p ; hsa-mir-7703

Nearest miRNA

hsa-mir-1180/Upstream/603469; hsa-mir-10226/Downstream/123310;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/31829, chr17-CpG: 166/Downstream/18134

Upstream sequence

gtagctgggattacagacatgtgccaccacacccagctaattttgtatttttagtagagacagggtttcaccatgttggtcaggctggtctccaactcct

Downstream sequence

gaccctcaggtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccactgcacctggccttttttcttttttttttttttttttga