VISDB Viral Integration Site DataBase

VIS ID

TVIS30007111

Fusion event

HIV-EFTUD2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.31

Reference genome

Start

End

42968408/44891040 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-1-3p ; hsa-mir-193b-3p ; hsa-mir-363-3p ; hsa-mir-92a-3p ; hsa-mir-218-5p ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6827-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-500b-3p ; hsa-mir-6514-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-1912 ; hsa-mir-1295b-5p ; hsa-mir-502-5p ; hsa-mir-7111-3p ; hsa-mir-4268 ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-627-3p ; hsa-mir-4679 ; hsa-mir-4677-3p ; hsa-mir-3189-3p ; hsa-mir-212-5p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183

Nearest miRNA

hsa-mir-1180/Upstream/683201; hsa-mir-10226/Downstream/43578;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/60347, chr17-CpG: 37/Downstream/8302

Upstream sequence

atatgagaatgtacactggattattaattacggcgagggaaggctggtgacaggtaaccttggtgtctatcactaagagaggaatgtcaccagggcaaac

Downstream sequence

cgagtagcagtcagttcccacagactagatgtacacacagcaacagggagaaaccctaaaatgcaccactcatcatgatgctgagtgggaaaagaaacag