Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS30007113
Basic Information
VIS ID
TVIS30007113
Fusion event
HIV-KIF18B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
43021143/44943775 (Hg38)
End
43021143/44943775 (Hg38)
Orient
-
Location type
Intronic
Target gene
KIF18B
miRNAs that regulate target gene
hsa-mir-196a-5p
;
hsa-mir-92a-3p
;
hsa-mir-6807-5p
;
hsa-mir-6788-3p
;
hsa-mir-4793-3p
;
hsa-mir-1273g-3p
;
hsa-mir-1231
;
hsa-mir-6869-5p
;
hsa-mir-4764-5p
;
hsa-mir-3134
;
hsa-mir-6804-5p
;
hsa-mir-7155-5p
;
hsa-mir-637
;
hsa-mir-8089
;
hsa-mir-4700-5p
;
hsa-mir-4667-5p
;
hsa-mir-654-3p
;
hsa-mir-2392
;
hsa-mir-6510-5p
;
hsa-mir-4690-5p
;
hsa-mir-6165
;
hsa-mir-6825-5p
;
hsa-mir-24-3p
;
hsa-mir-4284
;
hsa-mir-6089
;
hsa-mir-6499-5p
;
hsa-mir-5693
;
hsa-mir-1288-5p
;
hsa-mir-3165
;
hsa-mir-3656
;
hsa-mir-4786-5p
;
hsa-mir-4794
;
hsa-mir-5100
;
hsa-mir-6087
;
hsa-mir-664a-5p
;
hsa-mir-6849-3p
Nearest miRNA
hsa-mir-1180/Upstream/9094; hsa-mir-10226/Downstream/170592;
Nearest TSS
ENST00000595228/Upstream/7404;
ENST00000591013/Downstream/3862;
Nearest CpG islands
None/Target,
chr17-CpG: 26/Upstream/31995
,
chr17-CpG: 61/Downstream/3515
Upstream sequence
ttgaactttattgaattctattttcttttccttttccttttttatttttttagaccaggtctcatgttgttgcccaggctggaatgcagtggtgggatca
Downstream sequence
ccactcacagcagcctcgaactcctgggctcgagccatcttcccacttcatcatgtcacctacctccccagtagctgggaccacaggtgtgccaccatcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
Download
Curate