Basic Information
VIS ID
TVIS30007114
Fusion event
HIV-KIF18B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
43021197/44943829 (Hg38)
End
43021197/44943829 (Hg38)
Orient
-
Location type
Intronic
Target gene
KIF18B
miRNAs that regulate target gene
hsa-mir-196a-5p ; hsa-mir-92a-3p ; hsa-mir-6807-5p ; hsa-mir-6788-3p ; hsa-mir-4793-3p ; hsa-mir-1273g-3p ; hsa-mir-1231 ; hsa-mir-6869-5p ; hsa-mir-4764-5p ; hsa-mir-3134 ; hsa-mir-6804-5p ; hsa-mir-7155-5p ; hsa-mir-637 ; hsa-mir-8089 ; hsa-mir-4700-5p ; hsa-mir-4667-5p ; hsa-mir-654-3p ; hsa-mir-2392 ; hsa-mir-6510-5p ; hsa-mir-4690-5p ; hsa-mir-6165 ; hsa-mir-6825-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6089 ; hsa-mir-6499-5p ; hsa-mir-5693 ; hsa-mir-1288-5p ; hsa-mir-3165 ; hsa-mir-3656 ; hsa-mir-4786-5p ; hsa-mir-4794 ; hsa-mir-5100 ; hsa-mir-6087 ; hsa-mir-664a-5p ; hsa-mir-6849-3p
Nearest miRNA
hsa-mir-1180/Upstream/9148; hsa-mir-10226/Downstream/170538;
Nearest TSS
ENST00000595228/Upstream/7458; ENST00000591013/Downstream/3808;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/32049, chr17-CpG: 61/Downstream/3461
Upstream sequence
ccaggtctcatgttgttgcccaggctggaatgcagtggtgggatcaccactcacagcagcctcgaactcctgggctcgagccatcttcccacttcatcat
Downstream sequence
gtcacctacctccccagtagctgggaccacaggtgtgccaccatccctggctaatttttaatttttttgtagaaatgatgtctcactatgccgcccaggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate