Basic Information
VIS ID
TVIS30007118
Fusion event
HIV-MAP3K14-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
43337573/45260206 (Hg38)
End
43337573/45260206 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
MAP3K14-AS1
Nearest miRNA
hsa-mir-1180/Upstream/145773; hsa-mir-10226/Downstream/215157;
Nearest TSS
ENST00000595228/Upstream/5182; ENST00000585780/Downstream/1571;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/11844, chr17-CpG: 65/Downstream/1551
Upstream sequence
aaaaaaaaaaaaGgagatgaggtctcagtatgttgcccaggctggtctcaaactcctgagctcaagcgatcttcccatcttggcctcccagagtgttggg
Downstream sequence
attacaggcgtgagccaccatgcctggccTAATTTCTTACCTCAAATTCATATCTTGTATGTCCAGACTCTTAAGTGTGGCTGCCACGGTTCTGCCTGTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate