VISDB Viral Integration Site DataBase

VIS ID

TVIS30007122

Fusion event

HIV-PLEKHM1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.31

Reference genome

Start

End

43544322/45466956 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-106b-5p ; hsa-mir-183-5p ; hsa-mir-17-5p ; hsa-mir-3909 ; hsa-mir-106a-5p ; hsa-mir-106b-3p ; hsa-mir-1197 ; hsa-mir-1273a ; hsa-mir-1275 ; hsa-mir-1276 ; hsa-mir-133a-5p ; hsa-mir-1343-5p ; hsa-mir-138-5p ; hsa-mir-145-5p ; hsa-mir-151a-5p ; hsa-mir-151b ; hsa-mir-1537-3p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-29b-1-5p ; hsa-mir-29b-2-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-3125 ; hsa-mir-3150a-3p ; hsa-mir-3175 ; hsa-mir-3180-5p ; hsa-mir-342-5p ; hsa-mir-3660 ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-3914 ; hsa-mir-3916 ; hsa-mir-3928-3p ; hsa-mir-3973 ; hsa-mir-4271 ; hsa-mir-4311 ; hsa-mir-4437 ; hsa-mir-4447 ; hsa-mir-4463 ; hsa-mir-4472 ; hsa-mir-4525 ; hsa-mir-4526 ; hsa-mir-4645-3p ; hsa-mir-4651 ; hsa-mir-4655-5p ; hsa-mir-4664-5p ; hsa-mir-4665-5p ; hsa-mir-4721 ; hsa-mir-4723-5p ; hsa-mir-4725-3p ; hsa-mir-4747-5p ; hsa-mir-4768-3p ; hsa-mir-4779 ; hsa-mir-4786-5p ; hsa-mir-491-5p ; hsa-mir-5004-5p ; hsa-mir-5010-5p ; hsa-mir-5088-5p ; hsa-mir-512-3p ; hsa-mir-5195-3p ; hsa-mir-5196-5p ; hsa-mir-519d-3p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-521 ; hsa-mir-526b-3p ; hsa-mir-545-3p ; hsa-mir-5698 ; hsa-mir-583 ; hsa-mir-608 ; hsa-mir-6131 ; hsa-mir-6134 ; hsa-mir-625-5p ; hsa-mir-628-5p ; hsa-mir-634 ; hsa-mir-665 ; hsa-mir-6737-5p ; hsa-mir-6747-5p ; hsa-mir-6756-5p ; hsa-mir-6763-5p ; hsa-mir-6766-5p ; hsa-mir-6780b-5p ; hsa-mir-6812-5p ; hsa-mir-6819-5p ; hsa-mir-6825-5p ; hsa-mir-6847-5p ; hsa-mir-6859-5p ; hsa-mir-6870-5p ; hsa-mir-7111-5p ; hsa-mir-7155-5p ; hsa-mir-7704 ; hsa-mir-92a-2-5p ; hsa-mir-93-5p ; hsa-mir-939-5p

Nearest miRNA

hsa-mir-1180/Upstream/352523; hsa-mir-10226/Downstream/8407;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/33942, chr17-CpG: 67/Downstream/23291

Upstream sequence

aaggacctagcaattccattcccaggtatatatacccacagaaataagcaccgaggttctccaaaagcatgtatgagaatgttcactacagctttcttca

Downstream sequence

taatagtcaaaacctggaaacaacccaaatgtccattaacaggagaatgggtaataggttgcaatatatttttacaatggaatactgcagaacaatggaa