Basic Information
VIS ID
TVIS30007126
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
45079736/47002370 (Hg38)
End
45079736/47002370 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927060 ; LRRC37A2
miRNAs that regulate target gene
hsa-mir-615-3p ; hsa-mir-92a-3p ; hsa-let-7a-5p
Nearest miRNA
hsa-mir-1180/Upstream/29270; hsa-mir-10226/Downstream/1030512;
Nearest TSS
ENST00000595228/Upstream/23122; ENST00000572193/Downstream/121525;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/22898, chr17-CpG: 45/Downstream/97522
Nearby gene
RPRML(No orient, 23122)
Upstream sequence
tacaggaatgcaatgcataataatcacatcatggaaagtggggtatccagcccctcaagcatttatcctttgtgttacaaacaatccaattatacactct
Downstream sequence
taattatttttatttttattttttttttttagtttttgagacagcgtttcactcttcttgcccaggctggagtgcaatggcgctatcttggctcactgca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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