VISDB Viral Integration Site DataBase

VIS ID

TVIS30007142

Fusion event

HIV-UBE2Z integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.32

Reference genome

Start

End

46992630/48915268 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-340-5p ; hsa-mir-32-5p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-324-3p ; hsa-mir-183-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-196a-5p ; hsa-mir-16-5p ; hsa-mir-25-3p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-570-3p ; hsa-mir-651-3p ; hsa-mir-3613-3p ; hsa-mir-205-5p ; hsa-mir-153-5p ; hsa-mir-6835-3p ; hsa-mir-495-3p ; hsa-mir-5688 ; hsa-mir-4423-3p ; hsa-mir-500a-3p ; hsa-mir-767-5p ; hsa-mir-137 ; hsa-mir-4762-3p ; hsa-mir-6751-3p ; hsa-mir-4303 ; hsa-mir-1199-5p ; hsa-mir-4422 ; hsa-mir-2113 ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-550b-2-5p ; hsa-mir-3121-5p ; hsa-mir-3943 ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-5695 ; hsa-mir-671-5p ; hsa-mir-4263 ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-151b ; hsa-mir-151a-5p ; hsa-mir-611 ; hsa-mir-3131 ; hsa-mir-4254 ; hsa-mir-4308 ; hsa-mir-5584-5p ; hsa-mir-6779-3p ; hsa-mir-6873-5p ; hsa-mir-1238-5p ; hsa-mir-1275 ; hsa-mir-1296-3p ; hsa-mir-3202 ; hsa-mir-4271 ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-4481 ; hsa-mir-4525 ; hsa-mir-4658 ; hsa-mir-4665-5p ; hsa-mir-4723-5p ; hsa-mir-4725-3p ; hsa-mir-4745-5p ; hsa-mir-4747-5p ; hsa-mir-4758-5p ; hsa-mir-5010-5p ; hsa-mir-5196-5p ; hsa-mir-526b-5p ; hsa-mir-5698 ; hsa-mir-625-5p ; hsa-mir-6780b-5p ; hsa-mir-6790-5p ; hsa-mir-6870-5p ; hsa-mir-7111-5p

Nearest miRNA

hsa-mir-10226/Upstream/190793; hsa-mir-1250/Downstream/373078;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/6093, chr17-CpG: 39/Downstream/29432

Upstream sequence

AGCTTCAGAGAGCAGTAGGTCTAGAGTTCCTGGGGGAGCAAAGCTGAAAAGATAGAGGCACTTAAGAGCAGTCCCCAGTGAAGTTACTATTAGGCATTAC

Downstream sequence

TGACTTGGGCTTTCCTCAAGTACAGCAGGGAAACAGAAGCAGGCAGTCAACTTGAACAAGCCAGTCCTGGCTTAGGTTGTGTTCGGCTTCCAGCTCCGGT