VISDB Viral Integration Site DataBase

VIS ID

TVIS30007143

Fusion event

HIV-IGF2BP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.32

Reference genome

Start

End

47095008/49017646 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-let-7g-5p ; hsa-let-7a-5p ; hsa-mir-378a-3p ; hsa-mir-196a-5p ; hsa-let-7d-5p ; hsa-mir-1229-3p ; hsa-mir-877-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-99b-5p ; hsa-mir-320a ; hsa-let-7f-5p ; hsa-mir-5195-5p ; hsa-mir-6798-3p ; hsa-mir-3692-5p ; hsa-let-7c-5p ; hsa-let-7e-5p ; hsa-mir-98-5p ; hsa-let-7i-5p ; hsa-mir-133a-5p ; hsa-mir-138-5p ; hsa-mir-585-5p ; hsa-mir-3927-3p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-6131 ; hsa-mir-6831-5p ; hsa-mir-214-5p ; hsa-mir-891a-3p ; hsa-mir-1266-3p ; hsa-mir-6514-3p ; hsa-mir-6747-3p ; hsa-mir-6811-3p ; hsa-mir-6814-5p ; hsa-mir-8080 ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-577 ; hsa-mir-3935 ; hsa-mir-4639-5p ; hsa-mir-4745-3p ; hsa-mir-1538 ; hsa-mir-7160-3p ; hsa-mir-6075 ; hsa-mir-4524b-3p ; hsa-let-7c-3p ; hsa-mir-5681b ; hsa-mir-4999-5p ; hsa-mir-4718 ; hsa-mir-1537-5p ; hsa-mir-4774-5p ; hsa-mir-630 ; hsa-mir-6885-3p ; hsa-mir-190a-3p ; hsa-mir-200b-5p ; hsa-mir-200a-5p ; hsa-mir-5011-5p ; hsa-mir-4789-3p ; hsa-mir-8485 ; hsa-mir-548g-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-4433b-5p ; hsa-mir-4433a-5p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-7852-3p ; hsa-mir-3668 ; hsa-mir-5010-3p ; hsa-mir-2113 ; hsa-mir-4474-3p ; hsa-mir-7108-5p ; hsa-mir-2355-5p ; hsa-mir-642b-5p ; hsa-mir-3688-5p ; hsa-mir-4763-5p ; hsa-mir-6793-3p ; hsa-mir-625-5p ; hsa-mir-193a-5p ; hsa-mir-491-5p ; hsa-mir-9-5p ; hsa-mir-196b-5p ; hsa-mir-140-5p

Nearest miRNA

hsa-mir-10226/Upstream/293171; hsa-mir-1250/Downstream/270700;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/2797, chr17-CpG: 17/Downstream/18248

Nearest cancer related gene

IGF2BP1(OG, No orient, 0)

Upstream sequence

tggagggtacttaagttttagaaatctagtattctaaactAGATTAAAATTATTTCATATTCAtttatttattatttttcaagtcagagtctcactctgt

Downstream sequence

tgctcaggctggagtgcagtggcatgatatcagctcaccacaacctcagcctccggggttcaagcaattcttgagcctcagcttcccgagtagctgggat