VISDB Viral Integration Site DataBase

VIS ID

TVIS30007152

Fusion event

HIV-DGKE integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q22

Reference genome

Start

End

54920307/56842946 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-615-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-6807-5p ; hsa-mir-1306-5p ; hsa-mir-556-5p ; hsa-mir-744-3p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-455-3p ; hsa-mir-7641 ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-3194-3p ; hsa-mir-4695-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-3607-5p ; hsa-mir-572 ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-433-3p ; hsa-mir-7154-5p ; hsa-mir-4530 ; hsa-mir-922 ; hsa-mir-6858-3p ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-3199 ; hsa-mir-365a-5p ; hsa-mir-365b-5p ; hsa-mir-4258 ; hsa-mir-4707-3p ; hsa-mir-4740-3p ; hsa-mir-552-3p ; hsa-mir-764 ; hsa-mir-8052

Nearest miRNA

hsa-mir-10226/Upstream/6074216; hsa-mir-1250/Downstream/48324;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/7837, chr17-CpG: 89/Downstream/70525

Upstream sequence

TTAATAATAGAAACCCAGGACCTTTACCAGCTCTGTTCTCTGCTTGTTTTACCAATTGGGTCCAAACATAGTTGCAAATCTGAATGCACATGTTCTTACG

Downstream sequence

TCTATTTCAAAAGCAAGCATATGAATTATTTTCGTATTAACTGACAAAAAGAAATGCACGGTTGTACTTACATTTACAGGTTAAGAGATTTTCAAGCTGG