VISDB Viral Integration Site DataBase

VIS ID

TVIS30007159

Fusion event

HIV-VMP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q23.1

Reference genome

Start

End

57860140/59782779 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-210-3p ; hsa-mir-1-3p ; hsa-mir-16-5p ; hsa-mir-296-3p ; hsa-mir-25-3p ; hsa-mir-4776-3p ; hsa-mir-744-3p ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-5590-5p ; hsa-mir-7159-5p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-4694-5p ; hsa-mir-5186 ; hsa-mir-7978 ; hsa-mir-181a-3p ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-1324 ; hsa-mir-4709-5p ; hsa-mir-4272 ; hsa-mir-6856-3p ; hsa-mir-513b-3p ; hsa-mir-505-3p ; hsa-mir-421 ; hsa-mir-3161 ; hsa-mir-622 ; hsa-mir-4761-5p ; hsa-mir-624-3p ; hsa-mir-132-3p ; hsa-mir-212-3p ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-138-2-3p ; hsa-mir-4282 ; hsa-mir-4698 ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-555 ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-5680 ; hsa-mir-4506 ; hsa-mir-150-3p

Nearest miRNA

hsa-mir-10226/Upstream/416625; hsa-mir-1250/Downstream/58487;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/75032, chr17-CpG: 73/Downstream/109902

Upstream sequence

CGGCAAATTAAGTAAAATCAATCCGTAACTATGAGTGGAAATTTAAATTTTAAGATTGCATGAGAATGAGTTAGAAAATATGGGTTTTTATTTTTGAAGG

Downstream sequence

TAAAGCCCTGTAGTAGAGTAAGTTTATCAGCCAAAAAAGTAAAAACAAACAAACAAAAAAAACCACTTGGCTTTCATTGCTTTGCCATGTGCTTTCCAAC