Basic Information
VIS ID
TVIS30007166
Fusion event
HIV-USP32 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
58457192/60379831 (Hg38)
End
58457192/60379831 (Hg38)
Orient
+
Location type
Intronic
Target gene
USP32
miRNAs that regulate target gene
hsa-mir-18a-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-2117 ; hsa-mir-124-5p ; hsa-mir-4696 ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-17-5p ; hsa-mir-20b-5p ; hsa-mir-106a-5p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-130a-3p ; hsa-mir-454-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p
Nearest miRNA
hsa-mir-10226/Upstream/336726; hsa-mir-1250/Downstream/2564384;
Nearest TSS
ENST00000595228/Upstream/74603; ENST00000461535/Downstream/12097;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/228831, chr17-CpG: 86/Downstream/11788
Upstream sequence
TTAACGTTCAGAAGACGTATAAATGAGAGCAAAAGGTTATGGCTTAACAGAAAACTAAATAAGAAATAACTATTGATTTTTAAATAGCAACATATCACAA
Downstream sequence
TCATACAGACACACCAATGACTGTAACCATATGGTTCTCTCAATCATCAAGCATATGCTAAATTTGTGCTTAAAACAGTCCAATGTGGTTTTAAAAAAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate