Basic Information
VIS ID
TVIS30007167
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
58641438/60564077 (Hg38)
End
58641438/60564077 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/520972; hsa-mir-1250/Downstream/2380138;
Nearest TSS
ENST00000595228/Upstream/37778; ENST00000592917/Downstream/470;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/37722, chr17-CpG: 112/Downstream/35785
Nearby gene
RPSAP66(+469) ;
Upstream sequence
caatcctcctgcctcagactcctgagtagctgggactacaggcATTAGTTCTGGCtaattaaaaaaaaaaaaattataGAGATGGGTCCTCACAATGTTT
Downstream sequence
CCCAGGCtgagacatagggtttattgaggagacttacatacagggcaatccagtggtggcaggctggacaggagaactgcatttgcttacaaaaaacata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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