Basic Information
VIS ID
TVIS30007174
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
60289502/62212141 (Hg38)
End
60289502/62212141 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/2169036; hsa-mir-1250/Downstream/732074;
Nearest TSS
ENST00000595228/Upstream/146859; ENST00000635817/Downstream/131800;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/71506, chr17-CpG: 54/Downstream/211609
Nearby gene
TBC1D3P2(No orient, 52565)
Upstream sequence
tttggaagaataaagaccagttattttgtagaatgtcccttaatttggagttgcctgatgtttcctcaagattagggtcaagttatatgcttttctggca
Downstream sequence
aaaacaccacagaagtgatgtcatgttctacttaatgtgtcctgttaggaggcacattatgtccatttgtcccattcctggtgatgtcaactttgagcaT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate