Basic Information
VIS ID
TVIS30007180
Fusion event
HIV-TANC2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
61408359/63330998 (Hg38)
End
61408359/63330998 (Hg38)
Orient
+
Location type
Intronic
Target gene
TANC2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-99b-5p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-10226/Upstream/386686; hsa-mir-1250/Downstream/1169776;
Nearest TSS
ENST00000595228/Upstream/17477; ENST00000583545/Downstream/8055;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/363951, chr17-CpG: 19/Downstream/103294
Upstream sequence
aaccccatctctactaaaaatacaaaaattagccaggcatgatggcgcatgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaac
Downstream sequence
ccgggaggcagaggttgcagtgagccgagatgacaccattgcactccagcctgggcaacaagagtgaaactccatcccaaaaaaTAATAATGTATCTGGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate