Basic Information
VIS ID
TVIS30007182
Fusion event
HIV-STRADA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q23.3
Reference genome
End
61790912/63713552 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10226/Upstream/769240; hsa-mir-1250/Downstream/787222;
Nearest cancer related gene
STRADA(TSG, No orient, 0)
Upstream sequence
TCCGTACAGTCACGTACTCTCCTGTTGGTTTGTACCTTGCTAGATTCACAGTCATCAGGTCCTCAAATCCTTTGCCTAAAAGAAAAAGGGAATGCCATAC
Downstream sequence
GCAAGGACAAGAACAACAAAAGGTTTTAAGAAAATTTTCCTTTAAAAAAGGGACTTGATTTCAAAAGAAACTTAATGTTAAATTTTTCACTACTGTTACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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