Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene638046896362241563696303636823366374198663702845637520976369418263704360636959026370117263704861637086186367423263677730636647566366658363667773636693796370979263710853636797906368083463691240636921766367226663673175636815616368171063713552
Basic Information
VIS ID
TVIS30007182
Fusion event
HIV-STRADA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
61790912/63713552 (Hg38)
End
61790912/63713552 (Hg38)
Orient
-
Location type
Intronic
Target gene
STRADA
Nearest miRNA
hsa-mir-10226/Upstream/769240; hsa-mir-1250/Downstream/787222;
Nearest TSS
ENST00000595228/Upstream/2609; ENST00000581135/Downstream/505;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/12179, chr17-CpG: 60/Downstream/27772
Nearest cancer related gene
STRADA(TSG, No orient, 0)
Upstream sequence
TCCGTACAGTCACGTACTCTCCTGTTGGTTTGTACCTTGCTAGATTCACAGTCATCAGGTCCTCAAATCCTTTGCCTAAAAGAAAAAGGGAATGCCATAC
Downstream sequence
GCAAGGACAAGAACAACAAAAGGTTTTAAGAAAATTTTCCTTTAAAAAAGGGACTTGATTTCAAAAGAAACTTAATGTTAAATTTTTCACTACTGTTACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate