Fusion event
HIV-STRADA integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
61790912/63713552 (Hg38)
Nearest miRNA
hsa-mir-10226/Upstream/769240; hsa-mir-1250/Downstream/787222;
Nearest cancer related gene
Upstream sequence
TCCGTACAGTCACGTACTCTCCTGTTGGTTTGTACCTTGCTAGATTCACAGTCATCAGGTCCTCAAATCCTTTGCCTAAAAGAAAAAGGGAATGCCATAC
Downstream sequence
GCAAGGACAAGAACAACAAAAGGTTTTAAGAAAATTTTCCTTTAAAAAAGGGACTTGATTTCAAAAGAAACTTAATGTTAAATTTTTCACTACTGTTACT
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.