Basic Information
VIS ID
TVIS30007193
Fusion event
HIV-PLEKHM1P1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
62809727/64813609 (Hg38)
End
62809727/64813609 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
PLEKHM1P1
Nearest miRNA
hsa-mir-10226/Upstream/32785; hsa-mir-1250/Downstream/8421;
Nearest TSS
ENST00000595228/Upstream/151541; ENST00000577938/Downstream/46018;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/31930, chr17-CpG: 66/Downstream/23042
Upstream sequence
aaggacctagcaattccattcccaggtatatatacccacagaaataagcaccgagtttctccaaaagcatgtatgagaatgttcactacagctttcttca
Downstream sequence
taatagtcaaaacctggaaacaacccaaatgtccattaacgggagaatggataataggttgcgatatatttttacaatggaatactgcagaacaatggaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate