Basic Information
VIS ID
TVIS30007194
Fusion event
HIV-LOC107985000 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
62939815/64943697 (Hg38)
End
62939815/64943697 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107985000
Nearest miRNA
hsa-mir-10226/Upstream/121595; hsa-mir-1250/Downstream/1843375;
Nearest TSS
ENST00000595228/Upstream/435; ENST00000581796/Downstream/108212;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/23778, chr17-CpG: 38/Downstream/22126
Nearby gene
AMZ2P1(No orient, 22853)
Upstream sequence
GATTCTTTATTATACAAGTGTAACAGCTCTTAAGAGCAATTAGTTAAGTAAAATTTTGTCAGAAGATATGAGGATTACTCTCTTATTTAAAAAAAGTAAC
Downstream sequence
TTGCCAACAAACAGGCATGATTGAATTAGAGAAGCTTCAGTTTTTTGTGACCCTGCTCCTGAAGTGAAACTTGGATCCTAAACACCAAATGGTGGGTTCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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