Basic Information
VIS ID
TVIS30007201
Fusion event
HIV-PRKCA-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
64406454/66410336 (Hg38)
End
64406454/66410336 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
PRKCA-AS1
Nearest miRNA
hsa-mir-10226/Upstream/1588234; hsa-mir-1250/Downstream/376736;
Nearest TSS
ENST00000595228/Upstream/107379; ENST00000307139/Downstream/4637;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/106837, chr17-CpG: 48/Downstream/424632
Upstream sequence
TTTGTGTTTTCATTATTTGGGGATGCTTTTTCCTATTTATATGAGGAATATTTGTACATGATGAATACTGTGAACACTGCAAAAAGATTTCCCATGAATG
Downstream sequence
AACTCACAAATGGAAACTCAGACGTGGCTGGTCTGTGTTGCTTGTCACTGAAAACTGGACTAAGTCATTATAGCTTTTCCTTGTTTGAGGGATCTTTTGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate