Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS30007202
Basic Information
VIS ID
TVIS30007202
Fusion event
HIV-PRKCA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
64535719/66539601 (Hg38)
End
64535719/66539601 (Hg38)
Orient
-
Location type
Intronic
Target gene
PRKCA
miRNAs that regulate target gene
hsa-mir-375
;
hsa-mir-505-3p
;
hsa-mir-193b-3p
;
hsa-mir-92a-3p
;
hsa-mir-17-3p
;
hsa-mir-203a-3p
;
hsa-mir-218-5p
;
hsa-mir-371b-5p
;
hsa-mir-6828-5p
;
hsa-mir-1976
;
hsa-mir-6747-3p
;
hsa-mir-6727-3p
;
hsa-mir-4722-3p
;
hsa-mir-660-3p
;
hsa-mir-5193
;
hsa-mir-5196-3p
;
hsa-mir-6821-5p
;
hsa-mir-6842-3p
;
hsa-mir-647
;
hsa-mir-6514-3p
;
hsa-mir-7977
;
hsa-mir-1268b
;
hsa-mir-1268a
;
hsa-mir-585-3p
;
hsa-mir-5787
;
hsa-mir-4505
;
hsa-mir-4430
;
hsa-mir-3652
;
hsa-mir-24-3p
;
hsa-mir-4284
;
hsa-mir-6847-3p
;
hsa-mir-6811-3p
;
hsa-mir-214-5p
;
hsa-mir-4486
;
hsa-mir-142-3p
;
hsa-mir-150-5p
Nearest miRNA
hsa-mir-10226/Upstream/1717499; hsa-mir-1250/Downstream/247471;
Nearest TSS
ENST00000595228/Upstream/122747;
ENST00000307139/Downstream/295516;
Nearest CpG islands
None/Target,
chr17-CpG: 26/Upstream/236102
,
chr17-CpG: 48/Downstream/295367
Nearest cancer related gene
PRKCA
(OG, No orient, 0)
Upstream sequence
cacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccacatccagctaatttttttttatttttagtagagatggggttt
Downstream sequence
cactgtgttagccaggatagtctcgatcacctgatttgtgatctgcccgccttggcctcccaaagttctgggattacaggcgtaagcaccgcgcccggcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
Download
Curate