Basic Information
VIS ID
TVIS30007205
Fusion event
HIV-NOL11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
65721366/67725250 (Hg38)
End
65721366/67725250 (Hg38)
Orient
-
Location type
Intronic
Target gene
NOL11
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-766-3p ; hsa-mir-4323 ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-340-5p ; hsa-mir-4796-5p ; hsa-mir-3163 ; hsa-mir-1276 ; hsa-mir-3662
Nearest miRNA
hsa-mir-10226/Upstream/253665; hsa-mir-1250/Downstream/699201;
Nearest TSS
ENST00000595228/Upstream/1141; ENST00000577687/Downstream/11330;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/7098, chr17-CpG: 104/Downstream/99760
Upstream sequence
GGCCCAGGTTCTTTGAGTGTAATTAGTGAAACATAAACTGTCTATGCTTGGCATTGAATGGCCCCTCTGCTCCTTTTTTCCAACCATTAGATTTAGTATG
Downstream sequence
CCCTTCCTTGAATAGCAACTGAGACAGATGGGCAAAAGGAGACTAACAGCAGCTTTGGCCCATGCCAGTTGCTTTTTATTATAGATTGTAATACCTTTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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