VISDB Viral Integration Site DataBase

VIS ID

TVIS30007211

Fusion event

HIV-SUMO2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q25.1

Reference genome

Start

End

73170666/75174571 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-let-7b-5p ; hsa-mir-129-5p ; hsa-mir-1303 ; hsa-mir-4320 ; hsa-mir-3162-3p ; hsa-mir-32-3p ; hsa-mir-188-5p ; hsa-mir-6866-3p ; hsa-mir-6516-5p ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-455-3p ; hsa-let-7e-3p ; hsa-mir-3165 ; hsa-mir-6880-5p ; hsa-mir-8071 ; hsa-mir-4764-5p ; hsa-mir-4328 ; hsa-mir-4735-5p ; hsa-mir-1244 ; hsa-mir-1265 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-580-3p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-4461 ; hsa-mir-380-3p ; hsa-mir-665 ; hsa-mir-4664-3p ; hsa-mir-1180-3p ; hsa-mir-2054 ; hsa-mir-7977 ; hsa-mir-1203 ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-6807-5p ; hsa-mir-7847-3p ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-631 ; hsa-mir-3661 ; hsa-mir-4254 ; hsa-mir-1228-3p ; hsa-mir-619-3p

Nearest miRNA

hsa-mir-10226/Upstream/425872; hsa-mir-1250/Downstream/231498;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/19781, chr17-CpG: 142/Downstream/7396

Upstream sequence

cagtgagctataatgaggccactacacttcaacccgggcaacagagaggccctgtccctaaaaaaataattaaaatgaaaattaaaaataaaTGAATAAA

Downstream sequence

AACCATTGGCATTTCCTGAGCCTATTCCTATTTTCCTTTCTGTTCCCCTCTGGTCATACTTCCCAAAGCTCTGAACTCTACAAGAACTTATACTCCAGTG