Basic Information
VIS ID
TVIS30007217
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
73776728/75780647 (Hg38)
End
73776728/75780647 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/282019; hsa-mir-1250/Downstream/3874;
Nearest TSS
ENST00000595228/Upstream/867; ENST00000589790/Downstream/4124;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/684, chr17-CpG: 55/Downstream/4118
Nearby gene
H3F3B(No orient, 712)
Upstream sequence
TGTACTTCAAGTGAATGAAATGACTACAGCTAGAAAGTAAATAGTCCTACTATAGTATTTGCATGTCCATAAAGAATAAACAAAAGATAACTAAACTAGA
Downstream sequence
TATGTGCCCTTTTGTTTAATAGCATATCCTGGCAGGTATTACTTCTGAAGAAACATGACAAATGTGTAAATATGCTAATCCCTACCTTTGCCTAAGTAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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