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Viral Integration Site DataBase
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TVIS30007219
Basic Information
VIS ID
TVIS30007219
Fusion event
HIV-UNK integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
73789732/75793651 (Hg38)
End
73789732/75793651 (Hg38)
Orient
+
Location type
Intronic
Target gene
UNK
miRNAs that regulate target gene
hsa-mir-760
;
hsa-mir-186-5p
;
hsa-mir-17-3p
;
hsa-let-7a-5p
;
hsa-mir-17-5p
;
hsa-mir-20a-5p
;
hsa-mir-93-5p
;
hsa-mir-106a-5p
;
hsa-mir-106b-5p
;
hsa-mir-302a-3p
;
hsa-mir-302b-3p
;
hsa-mir-302c-3p
;
hsa-mir-302d-3p
;
hsa-mir-372-3p
;
hsa-mir-373-3p
;
hsa-mir-20b-5p
;
hsa-mir-520e
;
hsa-mir-520f-3p
;
hsa-mir-520a-3p
;
hsa-mir-526b-3p
;
hsa-mir-520b
;
hsa-mir-520c-3p
;
hsa-mir-519d-3p
;
hsa-mir-520d-3p
;
hsa-mir-636
;
hsa-mir-1264
;
hsa-mir-302e
;
hsa-mir-548t-5p
;
hsa-mir-3184-3p
;
hsa-mir-548az-5p
;
hsa-mir-3151-5p
;
hsa-mir-185-3p
;
hsa-mir-4283
;
hsa-mir-4489
;
hsa-mir-5001-5p
;
hsa-mir-762
;
hsa-mir-4498
;
hsa-mir-4492
;
hsa-mir-4745-5p
;
hsa-mir-4481
;
hsa-mir-4726-3p
;
hsa-mir-3934-5p
;
hsa-mir-4433a-3p
;
hsa-mir-4768-3p
;
hsa-mir-4459
;
hsa-mir-1296-3p
;
hsa-mir-4433b-3p
;
hsa-mir-6795-5p
;
hsa-mir-6887-5p
;
hsa-mir-625-5p
;
hsa-mir-6816-5p
;
hsa-mir-3196
;
hsa-mir-3180-3p
;
hsa-mir-3180
;
hsa-mir-6780b-5p
;
hsa-mir-4725-3p
;
hsa-mir-4271
;
hsa-mir-5196-5p
;
hsa-mir-4747-5p
;
hsa-mir-6787-5p
;
hsa-mir-663a
;
hsa-mir-4467
;
hsa-mir-1908-5p
;
hsa-mir-4533
;
hsa-mir-8072
;
hsa-mir-3960
;
hsa-mir-423-5p
;
hsa-mir-3184-5p
;
hsa-mir-6889-5p
;
hsa-mir-6777-5p
;
hsa-mir-3169
;
hsa-mir-328-3p
;
hsa-mir-6851-3p
;
hsa-mir-6775-3p
;
hsa-mir-1291
;
hsa-mir-4659b-3p
;
hsa-mir-4659a-3p
;
hsa-mir-4778-3p
;
hsa-mir-1277-5p
;
hsa-mir-5007-3p
;
hsa-mir-190a-3p
;
hsa-mir-466
;
hsa-mir-664a-3p
;
hsa-mir-6074
;
hsa-mir-5011-5p
;
hsa-mir-4643
;
hsa-mir-4789-3p
;
hsa-mir-149-3p
;
hsa-mir-4728-5p
;
hsa-mir-4740-5p
;
hsa-mir-6784-5p
;
hsa-mir-6785-5p
;
hsa-mir-6825-5p
;
hsa-mir-6857-3p
;
hsa-mir-6883-5p
Nearest miRNA
hsa-mir-10226/Upstream/9044; hsa-mir-1250/Downstream/304368;
Nearest TSS
ENST00000595228/Upstream/1880;
ENST00000586217/Downstream/18497;
Nearest CpG islands
None/Target,
chr17-CpG: 26/Upstream/8424
,
chr17-CpG: 78/Downstream/61528
Upstream sequence
GTTGGTGGCTCAATTTCTTTAGGACATAAAGAAGATACTGAGGCCTGTGACAGCCTGTGACAGTATCATCAAGTCGTATCTGAACTTATTGAACTGTTTC
Downstream sequence
CTCCCCTTCCTTATTCTTTATTCACAGTTTGCTTTTCATGTGCATAAGTTGACTCATTTGTTTCCTGTTAGCATTTGAAACACCATATAGCCACCATAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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