Basic Information
VIS ID
TVIS30007219
Fusion event
HIV-UNK integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
End
73789732/75793651 (Hg38)
Orient
+
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-760 ; hsa-mir-186-5p ; hsa-mir-17-3p ; hsa-let-7a-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-20b-5p ; hsa-mir-520e ; hsa-mir-520f-3p ; hsa-mir-520a-3p ; hsa-mir-526b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-519d-3p ; hsa-mir-520d-3p ; hsa-mir-636 ; hsa-mir-1264 ; hsa-mir-302e ; hsa-mir-548t-5p ; hsa-mir-3184-3p ; hsa-mir-548az-5p ; hsa-mir-3151-5p ; hsa-mir-185-3p ; hsa-mir-4283 ; hsa-mir-4489 ; hsa-mir-5001-5p ; hsa-mir-762 ; hsa-mir-4498 ; hsa-mir-4492 ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-4726-3p ; hsa-mir-3934-5p ; hsa-mir-4433a-3p ; hsa-mir-4768-3p ; hsa-mir-4459 ; hsa-mir-1296-3p ; hsa-mir-4433b-3p ; hsa-mir-6795-5p ; hsa-mir-6887-5p ; hsa-mir-625-5p ; hsa-mir-6816-5p ; hsa-mir-3196 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-4467 ; hsa-mir-1908-5p ; hsa-mir-4533 ; hsa-mir-8072 ; hsa-mir-3960 ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-6889-5p ; hsa-mir-6777-5p ; hsa-mir-3169 ; hsa-mir-328-3p ; hsa-mir-6851-3p ; hsa-mir-6775-3p ; hsa-mir-1291 ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-4778-3p ; hsa-mir-1277-5p ; hsa-mir-5007-3p ; hsa-mir-190a-3p ; hsa-mir-466 ; hsa-mir-664a-3p ; hsa-mir-6074 ; hsa-mir-5011-5p ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-149-3p ; hsa-mir-4728-5p ; hsa-mir-4740-5p ; hsa-mir-6784-5p ; hsa-mir-6785-5p ; hsa-mir-6825-5p ; hsa-mir-6857-3p ; hsa-mir-6883-5p
Nearest miRNA
hsa-mir-10226/Upstream/9044; hsa-mir-1250/Downstream/304368;
Upstream sequence
GTTGGTGGCTCAATTTCTTTAGGACATAAAGAAGATACTGAGGCCTGTGACAGCCTGTGACAGTATCATCAAGTCGTATCTGAACTTATTGAACTGTTTC
Downstream sequence
CTCCCCTTCCTTATTCTTTATTCACAGTTTGCTTTTCATGTGCATAAGTTGACTCATTTGTTTCCTGTTAGCATTTGAAACACCATATAGCCACCATAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate