VISDB Viral Integration Site DataBase

VIS ID

TVIS30007221

Fusion event

HIV-ACOX1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q25.1

Reference genome

Start

End

73971331/75975250 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-92b-5p ; hsa-mir-615-3p ; hsa-mir-3122 ; hsa-mir-3913-5p ; hsa-mir-155-5p ; hsa-mir-153-5p ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-mir-1273e ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-2467-3p ; hsa-mir-1827 ; hsa-mir-219b-3p ; hsa-mir-4649-3p ; hsa-mir-1247-3p ; hsa-mir-3919 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-3123 ; hsa-mir-302f ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-450a-1-3p ; hsa-mir-6796-5p ; hsa-mir-7109-5p ; hsa-mir-7977 ; hsa-mir-6742-5p ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-3151-5p ; hsa-mir-491-5p ; hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-383-3p ; hsa-mir-595 ; hsa-mir-7855-5p ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-3190-5p ; hsa-mir-6849-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6807-5p ; hsa-mir-6788-3p ; hsa-mir-6499-3p ; hsa-mir-4474-3p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6787-3p ; hsa-mir-342-3p ; hsa-mir-3065-3p ; hsa-mir-1228-3p ; hsa-mir-216b-5p ; hsa-mir-216a-5p ; hsa-mir-619-5p ; hsa-mir-5004-3p ; hsa-mir-4665-3p ; hsa-mir-636 ; hsa-mir-6778-3p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-520f-3p ; hsa-mir-302c-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-1293 ; hsa-mir-3165 ; hsa-mir-339-5p ; hsa-mir-363-5p ; hsa-mir-4421 ; hsa-mir-4483 ; hsa-mir-5699-3p ; hsa-mir-6134 ; hsa-mir-6745 ; hsa-mir-6748-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6771-3p

Nearest miRNA

hsa-mir-10226/Upstream/190643; hsa-mir-1250/Downstream/122769;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/33914, chr17-CpG: 67/Downstream/3640

Upstream sequence

CCCGCCAtttctttttttttcttttttggagacagtctccctctgttgcccaggctggagtacagtggtgtgatcccagctcacggcaacctctgcctcc

Downstream sequence

taggttcaagtgattctcatgcctcagcctcccaagtagctgggattataggcgtgtgccaccaagcccggttaattttgtattttagtagagaaggcgt