VISDB Viral Integration Site DataBase

VIS ID

TVIS30007232

Fusion event

HIV-SRSF2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q25.1

Reference genome

Start

End

74730256/76734174 (Hg38)

Orient

+

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-34b-5p ; hsa-mir-34c-5p ; hsa-mir-183-5p ; hsa-mir-130b-3p ; hsa-mir-155-5p ; hsa-mir-93-5p ; hsa-mir-186-5p ; hsa-let-7e-5p ; hsa-let-7a-5p ; hsa-mir-4731-3p ; hsa-mir-4801 ; hsa-mir-607 ; hsa-mir-3679-3p ; hsa-mir-4446-5p ; hsa-mir-4666a-5p ; hsa-mir-4724-3p ; hsa-mir-4671-3p ; hsa-mir-106b-5p ; hsa-mir-20a-5p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-29b-2-5p ; hsa-mir-5589-3p ; hsa-mir-885-5p ; hsa-mir-4328 ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-4742-5p ; hsa-mir-4717-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-6083 ; hsa-mir-675-3p ; hsa-mir-4745-3p ; hsa-mir-1538 ; hsa-mir-4708-3p ; hsa-mir-1304-3p ; hsa-mir-1208 ; hsa-mir-6760-3p ; hsa-mir-3922-5p ; hsa-mir-4747-3p ; hsa-mir-134-5p ; hsa-mir-3118 ; hsa-mir-1468-5p ; hsa-mir-2355-5p ; hsa-mir-3691-3p ; hsa-mir-6793-3p ; hsa-mir-6757-3p ; hsa-mir-548v ; hsa-mir-187-5p ; hsa-mir-6720-3p ; hsa-mir-668-5p ; hsa-mir-6080 ; hsa-mir-888-5p ; hsa-mir-221-3p ; hsa-mir-222-3p ; hsa-mir-301a-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-130a-3p ; hsa-mir-5096 ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-627-3p ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-3613-3p ; hsa-mir-501-5p ; hsa-mir-500a-5p ; hsa-mir-1264 ; hsa-mir-551b-5p ; hsa-mir-548c-3p ; hsa-mir-2909 ; hsa-mir-4278 ; hsa-mir-6789-5p ; hsa-mir-6824-5p ; hsa-mir-376a-2-5p ; hsa-mir-3935 ; hsa-mir-4772-5p ; hsa-mir-383-5p ; hsa-mir-153-5p ; hsa-mir-10b-3p ; hsa-mir-3668 ; hsa-mir-6512-5p ; hsa-mir-148a-5p ; hsa-mir-485-3p ; hsa-mir-539-3p ; hsa-mir-193a-3p ; hsa-mir-3130-3p ; hsa-mir-4261 ; hsa-mir-4496 ; hsa-mir-4793-3p ; hsa-mir-570-3p ; hsa-mir-6746-5p ; hsa-mir-6771-5p ; hsa-mir-6878-5p

Nearest miRNA

hsa-mir-10226/Upstream/636098; hsa-mir-1250/Downstream/2276;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/6836, chr17-CpG: 221/Downstream/2211

Nearest cancer related gene

SRSF2(OG, No orient, 0)

Upstream sequence

GGTCCTTCAAATAAATGGGGGAAAAAAAGACCGAGACATATTCTGAGAAAAGCTAACACCAAGAAAATGTTTTAATTAAACTACAGAAACAATGGTTATA

Downstream sequence

ATACAGAATATTCATAAGCAAAAAGATACACCATGTTATAAGTACTTACAAAGTTACAACCATTTGCTTCCTTAACATTTTCCATGTTAAGTTCATACAT